Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0071Conserved hypothetical protein. (196 aa)    
Predicted Functional Partners:
ABO_0069
Conserved hypothetical protein belongs to the family DUF394 (protein of unknown function) identified by sequence similarity; putative InterPro: TPR repeat.
 
   
 0.949
ABO_0070
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.823
ABO_0072
Hypothetical protein.
 
   
 0.807
mrcB
Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
    
 
 0.532
ABO_0066
Fumarylacetoacetate hydrolase family protein) identified by match to PFAM protein family HMMPF01557 InterPro: Fumarylacetoacetate (FAA) hydrolase family; Family membership.
  
    0.449
serA
D-3-phosphoglycerate dehydrogenase; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF02826 InterPro: D-isomer specific 2-hydroxyacid dehydrogenase; High confidence in function and specificity.
       0.424
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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