STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaDphaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity. (233 aa)    
Predicted Functional Partners:
ABO_0085
GMC oxidoreductase family protein, putative; Identified by sequence similarity; identified by match to PFAM protein family HMMPF00732; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership.
 
  
 0.849
aldH
Alcanivorax borkumensis aldehyde dehydrogenase,; Specificity unclear; Belongs to the aldehyde dehydrogenase family.
 
   
 0.763
ABO_0979
Conserved hypothetical protein.
  
     0.688
ABO_0086
Hypothetical protein.
  
  
 0.586
ABO_1789
Conserved hypothetical protein.
  
   
 0.557
ABO_0992
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
  
     0.494
ABO_2136
Conserved hypothetical protein.
  
     0.477
lip
Lipase; Identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site; High confidence in function and specificity.
  
     0.464
ABO_2467
Conserved hypothetical protein.
  
     0.456
ABO_1916
(conserved hypothetical protein) identified by sequencesimilarity; putative.
  
     0.423
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.