Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
adhCadhC; alcohol dehydrogenase class III, formaldehyde dehydrogenase hydroxyacid dehydrogenase family protein identified by match to TIGR protein family HMMTIGR01751 InterPro: Zinc-containing alcohol dehydrogenase superfamily; High confidence in function and specificity; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (369 aa)    
Predicted Functional Partners:
ABO_0116
Esterase, putative; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
AKR1A1
(oxidoreductase aldo/keto reductase family) identified by match to TIGR protein family HMMTIGR01293 InterPro: Aldo/keto reductase family; Family membership.
   
 0.924
aldh1
Identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Specificity unclear.
  
 0.916
alkH
(aldehyde dehydrogenase family protein) identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity.
  
 0.916
dhmA
Haloallkane dehalogenase; belongs to the haloalkane dehalogenase family. subfamily 1; High confidence in function and specificity.
    
  0.905
alkB2
Alkane-1-monooxygenase; Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C8-C16 hydrocarbons; Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.
    
 0.903
alkB1
Alkane 1-monooxygenase; Catalyzes the hydroxylation of n-alkanes and fatty acids in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C5-C12 hydrocarbons. Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.
    
 0.903
ABO_1175
Alcohol dehydrogenase, iron-containing, putative; (alcohol dehydrogenase iron-containing) identified by match to PFAM protein family HMMPF00465 InterPro: Iron-containing alcohol dehydrogenase; High confidence in function and specificity.
    
 
 0.776
ABO_2469
Conserved hypothetical protein.
  
  
 0.747
ABO_2476
Conserved hypothetical protein, identical to A.borkumensis_cds_2469.
  
  
 0.747
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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