STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimDType 1 pili subunit FimD; Identified by match to PFAM protein family HMMPF00577 InterPro: Fimbrial biogenesis outer membrane usher protein; Specificity unclear. (820 aa)    
Predicted Functional Partners:
fimC
Type 1 pili chaperone protein FimC; Identified by match to PFAM protein family HMMPF02753 and sequence similarity; Specificity unclear.
 
 
 0.998
csuC
Type 1 pili usher pathway chaperone CsuC; Identified by match to PFAM protein family HMMPF00345; Specificity unclear.
 
 0.992
ABO_0699
Conserved hypothetical protein.
 
 
 0.942
ABO_0702
Conserved hypothetical protein.
 
 
 0.941
csuD
Type 1 pili usher protein CsuD; Identified by sequence similarity; putative InterPro: Fimbrial biogenesis outer membrane usher protein; Function unclear.
  
  
0.931
ABO_0123
Fimbrial protein; Family membership.
  
 
 0.875
fimA
(Type-1 fimbrial protein, A chain precursor) identified by match to PFAM protein family HMMPF03797 and sequence similarity; High confidence in function and specificity.
  
 
 0.809
ABO_0015
Conserved hypothetical protein; Putative inner membrane protein as shown by TMHMM hits.
  
     0.641
ABO_0732
Peptide-aspartate beta-dioxygenase; Family membership.
  
    0.483
algL
Alginate lyase, Poly(beta-D-mannuronate lyase)(Poly(mana) alginate lyase, precursor; Family membership.
   
  
 0.464
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.