STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trkHPotassium uptake protein, TrkH family; Identified by match to PFAM protein family HMMPF03631 InterPro: Cation transport protein; Family membership. (483 aa)    
Predicted Functional Partners:
trkA
(potassium uptake protein TrkA) identified by match to PFAM protein family HMMPF02080 InterPro: KTN NAD-binding domain; Family membership.
 
 
 0.971
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
      0.840
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
 
      0.665
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.632
sun;
tRNA and rRNA cytosine-C5-methylase, putative; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.624
ABO_0271
(trkA) identified by match to PFAM protein family HMMPF02080 InterPro: KTN NAD-binding domain; Family membership.
  
 
 0.500
ABO_1091
Potassium channel protein; (cation transporter VIC family) identified by match to PFAM protein family HMMPF00914 InterPro: Cation channels (non-ligand gated); Family membership.
  
 
 0.499
ABO_0929
Transporter sodium/sulfate symporter family, identified by match to PFAM protein family HMMPF03600, TMHMM: reporting 12 transmembrane helices; Family membership.
  
  
 0.455
def-1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.437
ABO_2738
(sodium/hydrogen exchanger family protein) identified by match to PFAM protein family HMMPF03471 InterPro: Na+/H+ exchanger; Family membership; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
     
 0.425
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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