Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0132LysM domain protein; Region start changed from 142733 to 142994 (-261 bases). (357 aa)    
Predicted Functional Partners:
pilQ
Fimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein.
 
 
 
 0.959
ABO_2110
Hypothetical protein.
   
  
 0.894
pilO
Type 4 fimbrial biogenesis protein pilO.
 
   0.863
pilN-2
Type IV pili biogenesis protein PilN.
  
 
   0.860
pilM
Type IV fimbrial biogenesis protein PilM.
  
 
   0.858
pilZ
Type IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity.
  
    0.783
pilP
Type 4 fimbrial biogenesis protein PilP.
 
     0.774
ABO_1452
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58.
 
     0.754
ABO_1464
Conserved hypothetical protein; Identified by sequence similarity.
  
   
 0.751
ABO_1451
Transglutaminase-like superfamily domain protein; Identified by match to PFAM protein family HMMPF01841; Family membership.
  
     0.744
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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