Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0143Conserved hypothetical protein; Predicted metal-dependent hydrolase; identified by match to PFAM protein family HMMPF00892. (286 aa)    
Predicted Functional Partners:
ABO_2697
Hypothetical protein.
  
     0.719
ABO_0144
Transcriptional regulator, AraC family; Family membership.
 
     0.620
ABO_2696
(oxidoreductase, putative) identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity.
  
     0.542
ABO_2455
Conserved hypothetical protein; (InterPro: contains Esterase/lipase/thioesterase family active site, PS50187).
  
     0.520
ABO_1603
Conserved hypothetical protein.
  
     0.474
ABO_1715
Transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership.
  
     0.465
acdS-2
Identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.464
ABO_0665
Probable transctiptional regulator; (transcriptional regulator AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; High confidence in function and specificity.
  
     0.440
ABO_0189
Oxidoreductase short chaindehydrogenase/reductase family identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.436
ABO_1762
Hypothetical protein; Identified by sequence similarity.
  
     0.432
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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