Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABO_0146 | fpr | ABO_0146 | ABO_0145 | Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. | ferredoxin--NADP+ reductase; High confidence in function and specificity. | 0.674 |
ABO_0203 | fpr | ABO_0203 | ABO_0145 | FAD-dependent oxidoreductase family protein; Oxidoreductase, GB:L19299 SP:P41131 PID:304015GB:X59066 GB:X65460 GB:D28126 GB:D14710 SP:P25705PID:28938 PID:34468 PID:559317 and PID:559325;identified by sequence similarity; putative; Family membership. | ferredoxin--NADP+ reductase; High confidence in function and specificity. | 0.590 |
fpr | ABO_0146 | ABO_0145 | ABO_0146 | ferredoxin--NADP+ reductase; High confidence in function and specificity. | Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. | 0.674 |
fpr | ABO_0203 | ABO_0145 | ABO_0203 | ferredoxin--NADP+ reductase; High confidence in function and specificity. | FAD-dependent oxidoreductase family protein; Oxidoreductase, GB:L19299 SP:P41131 PID:304015GB:X59066 GB:X65460 GB:D28126 GB:D14710 SP:P25705PID:28938 PID:34468 PID:559317 and PID:559325;identified by sequence similarity; putative; Family membership. | 0.590 |