STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0146Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
ABO_0484
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership.
  
     0.732
ABO_1099
Transcriptional regulator, LysR family; Identified by sequencesimilarity; putative InterPro: Bacterial regulatory protein LysR family; Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.679
fpr
ferredoxin--NADP+ reductase; High confidence in function and specificity.
 
     0.673
ABO_2427
Transcriptional regulator, LysR family; Identified by sequence similarity; putative InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.601
ABO_2123
(transcriptional regulator, putative) identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family HTH reporting nucleic acid binding motif; Family membership.
  
     0.598
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate.; Belongs to the CobS family.
       0.470
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.