Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
znuB(zinc ABC transporter permease protein ZnuB) identified by match to PFAM protein family HMMPF01032 InterPro: ABC 3 transport family; Family membership. (282 aa)    
Predicted Functional Partners:
znuC
Zinc transport protein, ATPase; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 0.999
znuA
High-affinity zinc uptake system protein znuA precursor; Periplasmic solute binding protein.identified by sequence similarity; conserved hypothetical protein.
 
 
 0.996
ABO_2139
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.840
ABO_0158
(MATE efflux family protein, putative) identified by match to PFAM protein family HMMPF04235 InterPro: Uncharacterized domain UPF0013; Family membership.
       0.576
ABO_1677
Transcriptional regulator, Fur family; Identified by sequencesimilarity; putative InterPro: Ferric uptake regulator family; Family membership; Belongs to the Fur family.
  
  
 0.546
ABO_1675
Hypothetical protein.
  
  
 0.499
ABO_2368
Probable ATP-binding ABC transporter protein; Family membership.
   
 0.467
ABO_0553
ABC transporter, ATP-binding protein, putative; Identified by match to TIGR protein family HMMTIGR00968 InterPro: AAA ATPase superfamily; Specificity unclear.
 
   
 0.439
ABO_1219
(oligopeptide ABC transporter periplasmic peptide-binding protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF00496; putative InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear.
    
 0.422
ABO_1220
(oligopeptide ABC transporter periplasmic peptide-binding protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF00496; putative InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear.
    
 0.422
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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