Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fadBlong-chain-fatty-acid-CoA ligase, putative; Identified by match to TIGR protein family HMMTIGR01734; High confidence in function and specificity. (516 aa)    
Predicted Functional Partners:
ABO_0055
Acyltransferase identified by match to PFAM protein family HMMPF04241 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership.
  
 0.908
fadE-1
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF02770 InterPro: Acyl-CoA dehydrogenase; Hypothetical protein.
  
 
 0.821
fadE-2
Acyl-CoA dehydrogenase, putative; Identified by sequencesimilarity InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity.
  
 
 0.819
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
 
 0.718
ABO_0187
Oxidoreductase GMC family identified by sequencesimilarity; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership.
     
 0.661
ABO_0183
Hypothetical protein.
       0.621
ABO_0182
Hypothetical protein.
       0.593
ABO_0181
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
       0.570
gcdH
glutaryl-CoA dehydrogenase; Identified by match to PFAM protein family HMMPF00441; High confidence in function and specificity.
 
 
 0.566
qor
Quinone oxidureductase, putative; Family membership.
  
 
 0.545
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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