STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0196Oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; conserved hypothetical protein. (279 aa)    
Predicted Functional Partners:
ABO_0197
Metal-dependent hydrolase, putative; Predicted metal-dependent hydrolase; conserved hypothetical protein.
 
     0.861
estB
(lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxylesterase family active site; High confidence in function and specificity.
       0.656
ABO_0194
Monooxygenase flavin-binding family (oxydoreductase with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by sequence similarity; putative InterPro: Flavin-containing monooxygenase (FMO); conserved hypothetical protein.
     
 0.654
ABO_0198
Transcriptional regulator, TetR family; Family membership.
       0.506
ABO_2480
Conserved hypothetical protein.
  
     0.454
ABO_1026
Oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106; Family membership.
  
 
   0.406
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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