Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0199Transcriptional regulator, AraC family; Family membership. (371 aa)    
Predicted Functional Partners:
p450
(oxidoreductase cytochrome p450 family protein) (acting on paired donors with incorporation of molecular oxygen) identified by sequencesimilarity; High confidence in function and specificity.
 
   
 0.749
fdx
Ferredoxin, 2Fe-2S; Identified by sequencesimilarity; putative InterPro: Ferredoxin; Family membership.
 
   
 0.733
alkJ2
Alcohol dehydrogenase, GMC-oxidoreductase; FAD flavoprotein oxidoreductase; Choline dehydrogenase (CHD) (CDH); High confidence in function and specificity.
     
 0.557
p450-2
P450, cytochrome p450 (conserved hypothetical protein) very GP:2588989; identified by sequencesimilarity; High confidence in function and specificity.
 
   
 0.451
ABO_2480
Conserved hypothetical protein.
  
     0.440
ABO_0181
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.420
ABO_0203
FAD-dependent oxidoreductase family protein; Oxidoreductase, GB:L19299 SP:P41131 PID:304015GB:X59066 GB:X65460 GB:D28126 GB:D14710 SP:P25705PID:28938 PID:34468 PID:559317 and PID:559325;identified by sequence similarity; putative; Family membership.
 
     0.408
ABO_1568
Conserved hypothetical protein.
  
     0.406
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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