Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0223Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
ABO_0222
Conserved hypothetical protein.
 
 
 0.998
ABO_0218
Conserved hypothetical protein.
 
 
 0.994
ABO_0221
Type II/IV secretion system protein family; Family membership.
 
 
 0.994
ABO_0220
Hypothetical protein.
 
 
 0.992
ABO_0224
Conserved hypothetical protein.
 
 
 0.992
ABO_0219
Bacterial type II and III secretion system protein family membership; Belongs to the bacterial secretin family.
 
 
 0.990
ABO_0226
Hypothetical protein.
  
 
 0.958
ABO_0225
Hypothetical protein.
       0.705
ABO_0217
Hypothetical protein.
  
    0.590
ABO_2546
(fatty acid desaturase, putative) identified by sequencesimilarity; putative InterPro: Fatty acid desaturase type 2; High confidence in function and specificity.
  
     0.549
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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