STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0239Uncharacterized iron-regulated protein; Function unclear. (429 aa)    
Predicted Functional Partners:
ABO_0240
Conserved hypothetical protein; Identified by Glimmer2; putative.
    0.963
ABO_0241
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.922
ABO_0242
Conserved hypothetical protein.
 
    0.872
ABO_2597
(iron ABC transporter periplasmic iron-bindingprotein putative) identified by sequence similarity; putative InterPro: Bacterial extracellular solute-binding protein family 1; Family membership.
  
    0.774
narB
(probable nitrate reductase large subunit) identified by sequencesimilarity; putative InterPro: Prokaryotic molybdopterin oxidoreductases; Family membership; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
    0.533
ABO_1694
Conserved hypothetical protein.
   
    0.498
copC
Copper-binding protein plastocyanin/azurin family identified by match to PFAM protein family HMMPF00127; Specificity unclear.
  
     0.453
nhaD
Na+/H+ antiporter, putative; Specificity unclear.
       0.441
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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