STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macBABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (644 aa)    
Predicted Functional Partners:
ABO_0248
ABC export system membrane fusion protein identified by sequencesimilarity; putative InterPro: HlyD family secretion protein; Function unclear; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.996
ABO_0250
Outer membrane protein identified by sequence similarity; putative InterPro: Outer membrane efflux protein; Function unclear.
 
 0.978
czcB3
(heavy metal RND efflux membrane fusion protein,CzcB family) identified by sequence similarity; putative; Family membership.
  
 
 0.967
ABO_0965
(multidrug/solvent RND membrane fusion protein) identified by sequence similarity; putative InterPro: HlyD family secretion protein; High confidence in function and specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.951
ABO_2747
(RND efflux membrane fusion protein, putative); identify by sequence similarity, putative; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.942
czcB2
Heavy metal RND efflux membrane fusion protein CzcB family identified by sequence similarity; putative; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.935
czcB1
Heavy metal RND efflux membrane fusion protein (CzcB family) identified by sequence similarity; putative; Family membership.
  
 
 0.934
czcB
Cation efflux system protein; Identified by match to TIGR protein family HMMTIGR01730; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.934
ABO_2523
(RND transporter membrane fusion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; High confidence in function and specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.934
mtdA
Multidrug resistance protein mdtA precursor; conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.934
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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