Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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co-expression
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[Homology]
Score
algQ(AlgQ, AlgR2) (transcriptional regulator; Regulator of RNA polymerase sigma(70)) identified by sequence similarity; putative; conserved hypothetical protein; Belongs to the Rsd/AlgQ family. (166 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.946
rpoH
RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.745
ABO_2115
Hypothetical protein; Identified by sequence similarity.
  
     0.641
dsbB
Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
       0.510
ydaA
Universal stress protein family; Identified by sequencesimilarity; putative InterPro: Universal stress protein (Usp); Specificity unclear.
  
   
 0.491
ABO_1440
Conserved hypothetical protein.
  
     0.469
ABO_2497
Conserved hypothetical protein.
  
     0.445
ABO_0260
Effector of murein hydrolase, putative; Membrane protein of LrgB-like family identified by sequencesimilarity; putative; Function unclear.
       0.437
ABO_0261
Hypothetical protein.
       0.437
algS
Sigma factor algU negative regulatory protein AlgS; Identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity.
  
   
 0.417
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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