Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0264S1 RNA binding domain protein identified by match to PFAM protein family HMMPF00575; Function unclear. (790 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.809
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.791
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.765
ABO_1193
(SET domain protein lysine methyltransferase, putative) InterPro: SET-domain of transcriptional regulators (TRX EZ ASH1 etc); Family membership.
   
 
 0.761
gshA
(glutamate-cysteine ligase) identified by sequence similarity; putative; High confidence in function and specificity; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
       0.604
pilH-2
(PilH; regulatory protein pilH family) identified by sequence similarity; putative InterPro: Response regulator receiver domain; Family membership.
       0.519
ABO_0746
Conserved hypothetical protein.
    
 0.488
ABO_0894
Conserved hypothetical protein.
    
 0.488
ABO_1043
Conserved hypothetical protein.
    
 0.488
ABO_1727
Conserved hypothetical protein.
    
 0.488
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.