Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ABO_0266(cation multi-drug efflux pump, Transporter of the RND family of multidrug efflux pump, putative) identified by match to PFAM protein family HMMPF04165 InterPro: Acriflavin resistance protein; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1203 aa)    
Predicted Functional Partners:
ABO_0267
Multidrug resistance protein; Putative secreted protein; Function unclear.
 
   
 0.954
mtdA
Multidrug resistance protein mdtA precursor; conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.679
ABO_2747
(RND efflux membrane fusion protein, putative); identify by sequence similarity, putative; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.645
ABO_2523
(RND transporter membrane fusion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; High confidence in function and specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.635
czcB2
Heavy metal RND efflux membrane fusion protein CzcB family identified by sequence similarity; putative; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.559
czcB
Cation efflux system protein; Identified by match to TIGR protein family HMMTIGR01730; Family membership; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.542
ompR1
(ompR-1) identified by sequencesimilarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity.
     
 0.509
ABO_0248
ABC export system membrane fusion protein identified by sequencesimilarity; putative InterPro: HlyD family secretion protein; Function unclear; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.469
ABO_0965
(multidrug/solvent RND membrane fusion protein) identified by sequence similarity; putative InterPro: HlyD family secretion protein; High confidence in function and specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.469
czcB1
Heavy metal RND efflux membrane fusion protein (CzcB family) identified by sequence similarity; putative; Family membership.
  
 
 0.469
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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