STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0270Glycosidases; Murein hydrolase B (hydrolysing O- and S-glycosyl compounds) identified by match to PFAM protein family HMMPF01471 InterPro: Putative peptidoglycan binding domain 1; Specificity unclear. (401 aa)    
Predicted Functional Partners:
ABO_2743
Conserved hypothetical protein; Identified by sequence similarity; putative InterPro: conserved hypothetical protein (UPF0010_DUF); Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.646
ABO_1766
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0260 family.
     0.642
amiB
N-acetylmuramoyl-L-alanine amidase; Identified by sequencesimilarity; putative InterPro: Cell wall hydrolase/autolysin; High confidence in function and specificity.
     
 0.589
ABO_1221
Membrane-bound lytic murein transglycosylase D; Identified by match to PFAM protein family HMMPF01464 InterPro: SLT domain; High confidence in function and specificity.
     
 0.543
dacA
D-alanyl-D-alanine-carboxypeptidase; (D-alanyl-D-alanine carboxypeptidase) identified by sequencesimilarity; putative InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; High confidence in function and specificity; Belongs to the peptidase S11 family.
 
  
 0.508
ABO_0271
(trkA) identified by match to PFAM protein family HMMPF02080 InterPro: KTN NAD-binding domain; Family membership.
       0.497
ABO_0272
Potassium uptake protein TrkH family identified by match to PFAM protein family HMMPF04247 InterPro: Cation transport protein; Family membership.
       0.497
mrdA
Penicillin-binding protein 2, putative; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
   
 
 0.463
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.441
rlpA
Lipoprotein, rare lipoprotein A family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.404
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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