Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0271(trkA) identified by match to PFAM protein family HMMPF02080 InterPro: KTN NAD-binding domain; Family membership. (216 aa)    
Predicted Functional Partners:
ABO_0272
Potassium uptake protein TrkH family identified by match to PFAM protein family HMMPF04247 InterPro: Cation transport protein; Family membership.
 
 0.993
trkH
Potassium uptake protein, TrkH family; Identified by match to PFAM protein family HMMPF03631 InterPro: Cation transport protein; Family membership.
  
 
 0.500
ABO_0270
Glycosidases; Murein hydrolase B (hydrolysing O- and S-glycosyl compounds) identified by match to PFAM protein family HMMPF01471 InterPro: Putative peptidoglycan binding domain 1; Specificity unclear.
       0.497
moaE
Molybdenum cofactor biosynthesis protein E; Identified by sequencesimilarity; putative InterPro: Molydopterin converting factor subunit 2; High confidence in function and specificity.
   
    0.483
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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