ABO_0343 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_0343

Conserved hypothetical protein; Identified by Glimmer2. (58 aa)

Predicted Functional Partners:

ABO_0342

0.853

hydG

0.709

gltX

0.568

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABO_0342	ABO_0343	ABO_0342	ABO_0343	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	Conserved hypothetical protein; Identified by Glimmer2.	0.853
ABO_0342	gltX	ABO_0342	ABO_0344	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	0.571
ABO_0342	hydG	ABO_0342	ABO_0341	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	0.904
ABO_0343	ABO_0342	ABO_0343	ABO_0342	Conserved hypothetical protein; Identified by Glimmer2.	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	0.853
ABO_0343	gltX	ABO_0343	ABO_0344	Conserved hypothetical protein; Identified by Glimmer2.	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	0.568
ABO_0343	hydG	ABO_0343	ABO_0341	Conserved hypothetical protein; Identified by Glimmer2.	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	0.709
gltX	ABO_0342	ABO_0344	ABO_0342	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	0.571
gltX	ABO_0343	ABO_0344	ABO_0343	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	Conserved hypothetical protein; Identified by Glimmer2.	0.568
gltX	hydG	ABO_0344	ABO_0341	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	0.440
hydG	ABO_0342	ABO_0341	ABO_0342	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	(sensory box histidine kinase putative) identified by match to PFAM protein family HMMPF02518; putative InterPro: Sodium:solute symporter family; Family membership.	0.904
hydG	ABO_0343	ABO_0341	ABO_0343	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	Conserved hypothetical protein; Identified by Glimmer2.	0.709
hydG	gltX	ABO_0341	ABO_0344	Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity.	glutamyl-tRNA synthetase-related protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.	0.440