STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
alg44Alginate biosynthesis protein Alg44; Function unclear. (378 aa)    
Predicted Functional Partners:
algD
GDP-mannose 6-dehydrogenase; Identified by sequence similarity; putative InterPro: UDP-glucose/GDP-mannose dehydrogenase family; High confidence in function and specificity.
    
  0.960
alg8
Alginate biosynthesis protein Alg8; Function unclear.
    
  0.960
algG
alginate-C5-mannuronan-epimerase AlgG, putative); identified by sequence similarity; Family membership.
    
  0.907
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.808
algE
(outer membrane protein AlgE); High confidence in function and specificity.
       0.713
algX
Alginate biosynthesis protein AlgX; Identified by sequencesimilarity; putative; Function unclear.
       0.695
algJ
Alginate O-acetylation protein AlgJ; High confidence in function and specificity.
       0.675
algI
Alginate O-acetylation protein AlgI; High confidence in function and specificity; Belongs to the membrane-bound acyltransferase family.
       0.673
algL
Alginate lyase, Poly(beta-D-mannuronate lyase)(Poly(mana) alginate lyase, precursor; Family membership.
     
 0.672
algK
(alginate biosynthesis regulator AlgK) identified by sequence similarity; putative InterPro: TPR repeat; High confidence in function and specificity.
       0.660
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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