Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
algXAlginate biosynthesis protein AlgX; Identified by sequencesimilarity; putative; Function unclear. (488 aa)    
Predicted Functional Partners:
algI
Alginate O-acetylation protein AlgI; High confidence in function and specificity; Belongs to the membrane-bound acyltransferase family.
  
 
 0.995
algJ
Alginate O-acetylation protein AlgJ; High confidence in function and specificity.
  
 
0.994
algF
Alginate O-acetyltransferase; High confidence in function and specificity.
  
 
 0.992
algL
Alginate lyase, Poly(beta-D-mannuronate lyase)(Poly(mana) alginate lyase, precursor; Family membership.
  
  
 0.962
algE
(outer membrane protein AlgE); High confidence in function and specificity.
  
  
 0.959
algK
(alginate biosynthesis regulator AlgK) identified by sequence similarity; putative InterPro: TPR repeat; High confidence in function and specificity.
  
 
 0.955
algG
alginate-C5-mannuronan-epimerase AlgG, putative); identified by sequence similarity; Family membership.
  
  
 0.782
alg44
Alginate biosynthesis protein Alg44; Function unclear.
       0.695
algD
GDP-mannose 6-dehydrogenase; Identified by sequence similarity; putative InterPro: UDP-glucose/GDP-mannose dehydrogenase family; High confidence in function and specificity.
  
  
 0.692
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
  
 0.672
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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