STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
algLAlginate lyase, Poly(beta-D-mannuronate lyase)(Poly(mana) alginate lyase, precursor; Family membership. (347 aa)    
Predicted Functional Partners:
algE
(outer membrane protein AlgE); High confidence in function and specificity.
  
  
 0.963
algX
Alginate biosynthesis protein AlgX; Identified by sequencesimilarity; putative; Function unclear.
  
  
 0.962
algJ
Alginate O-acetylation protein AlgJ; High confidence in function and specificity.
  
  
 0.960
algI
Alginate O-acetylation protein AlgI; High confidence in function and specificity; Belongs to the membrane-bound acyltransferase family.
  
  
 0.954
algG
alginate-C5-mannuronan-epimerase AlgG, putative); identified by sequence similarity; Family membership.
  
 
 0.944
algF
Alginate O-acetyltransferase; High confidence in function and specificity.
  
  
 0.899
algK
(alginate biosynthesis regulator AlgK) identified by sequence similarity; putative InterPro: TPR repeat; High confidence in function and specificity.
  
  
 0.819
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
  
 0.697
alg44
Alginate biosynthesis protein Alg44; Function unclear.
     
 0.672
rec2
(DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership.
  
  
 0.668
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.