Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0432Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
ABO_0433
(xcpQ) (type II secretion pathway protein XcpQ) identified by sequence similarity; putative InterPro: General (type II) secretion pathway (GSP) D protein; Function unclear.
 
 
 0.994
gspJ
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP J family,identified by sequence similarity; Family membership.
 
  
 0.903
gspK
Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes. Belongs to the GSP K family,identified by sequence similarity; Family membership.
 
  
 0.877
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.871
gspI
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP I family,identified by sequence similarity InterPro: Bacterial type II secretion system protein I/J; Family membership.
 
  
 0.870
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.841
gspG
Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane.Belongs to the GSP G family; Family membership.
 
  
 0.816
ABO_0636
Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Rhomboid family shows homololgy to a Rhomboid-like protein. This family contains integral membrane proteins that arerelated to Drosophila rhomboid protein P20350. Members of this family are found in bacteria and eukaryotes. These proteins contain three strongly conserved histidines in the putative transmembrane regions that may be involved in the as yet unknown function of these proteins.
 
     0.681
ABO_1268
Conserved hypothetical protein.
  
 
 0.680
ABO_0431
Conserved hypothetical protein.
       0.619
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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