STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0436Hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership. (323 aa)    
Predicted Functional Partners:
ABO_0437
Conserved hypothetical protein.
       0.806
ABO_2449
Hydrolase, alpha/beta fold family; Identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
  
     0.503
ABO_2466
FAD-dependent oxidoreductase protein; Identified by match to TIGR protein family HMMTIGR01679 InterPro: FAD linked oxidase N-terminal; Family membership.
 
   
 0.482
ABO_1026
Oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106; Family membership.
  
  0.477
ABO_1197
Carboxylic ester hydrolases identified by sequencesimilarity; putative InterPro: Alpha/beta hydrolase fold; Family membership.
  
     0.459
ABO_0957
acyl-CoA dehydrogenase putative identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear.
  
 
  0.424
ABO_2112
Dehydrogenase/reductase; Oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.424
ABO_1529
(CAIB/BAIF family protein; CoA-transferase family protein) identified by match to PFAM protein family HMMPF02515 InterPro: CAIB/BAIF family; Family membership; Belongs to the CoA-transferase III family.
  
  
  0.421
ABO_0438
Oxidoreductase; Nitrobenzoate reductase putative identified by sequencesimilarity; putative InterPro: Nitroreductase family; High confidence in function and specificity.
  
    0.413
ABO_1783
(glycosyl transferase, putative) identified by sequencesimilarity; putative; Family membership.
 
    0.407
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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