Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0447Conserved hypothetical protein; Identified by sequencesimilarity; putative. (139 aa)    
Predicted Functional Partners:
ABO_0448
Conserved hypothetical protein.
       0.838
ABO_0903
Conserved hypothetical protein; Identified by sequence similarity; Family membership.
 
  
   0.639
slyX
Hypothetical protein predicted; Belongs to the SlyX family.
 
    0.630
ABO_0446
Transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership.
       0.504
ABO_2155
(two-component protein: Na-solute symporter/sensory box histidinekinase/response regulator putative) identified by match to PFAM protein family HMMPF02518 and HMMPF00072; putative InterPro: Sodium:solute symporter family TMHMM: reportin 12 transmembrane helices; Family membership.
 
 
   0.475
ABO_0070
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.426
glnA
(glutamine synthetase type I, glutamate-ammonia ligase) identified by sequence similarity; putative identified by match to TIGRFAM protein family HMMTIGR00653; High confidence in function and specificity.
   
   0.414
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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