Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_0468Secretion protein putative identifiedby sequence similarity; putative InterPro: Fimbrial protein pilin; High confidence in function and specificity. (149 aa)    
Predicted Functional Partners:
ABO_0467
Pilin biogenesis related protein.
 
  
 0.970
ABO_0465
Conserved hypothetical protein.
 
  
 0.965
ABO_0464
Conserved hypothetical protein.
 
  
 0.958
ABO_0466
Hypothetical protein.
  
  
 0.907
pilN
(putative pilus biogenesis protein); Family membership.
 
  
 0.897
pilM
Type IV fimbrial biogenesis protein PilM.
 
   
 0.781
pilQ
Fimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein.
 
   
 0.771
pilD
Leaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.762
pilO
Type 4 fimbrial biogenesis protein pilO.
 
  
 0.731
pilN-2
Type IV pili biogenesis protein PilN.
 
  
 0.728
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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