Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0487Conserved hypothetical protein. (179 aa)    
Predicted Functional Partners:
ABO_1512
Sulfate permease protein; Identified by match to PFAM protein family HMMPF04235 InterPro: Sulfate transporter; Family membership.
   
   0.461
sulP
Sulphate anion transporter, Sulfate transporter family, sulP: sulfate permease; conserved hypothetical protein.
   
   0.461
sulP-2
Sulfate transporter 1.1 (High-affinity sulfate transporter 1) (Hst1At) (AST101)., Sulphate anion transporter, Sulfate transporter family, TIGRFAM:sulP: sulfate permease; High confidence in function and specificity.
   
   0.461
ABO_2215
Heptosyltransferase II, putatative; Heptosyltransferase II; identified by sequence similarity; putative InterPro: Glycosyltransferase family 9 Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core; High confidence in function and specificity.
  
   0.416
waaC
(heptosyltransferase I); High confidence in function and specificity.
  
   0.416
waaF
(ADP-heptose--LPS heptosyltransferase II, putative); identify by similarity to InterPro IPR002201 and PFAM protein family PF01075. InterPro IPR002201; Glyco_trans_9. lipopolysaccharide core biosynthesis; High confidence in function and specificity.
  
   0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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