Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0506(aminotransferase, putative) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; Family membership. (401 aa)    
Predicted Functional Partners:
ABO_0508
(D-isomer specific 2-hydroxyacid dehydrogenase family protein) identified by match to PFAM protein family HMMPF00389; putative InterPro: D-isomer specific 2-hydroxyacid dehydrogenase; Family membership.
 
 
 0.849
ABO_0507
Amidase family protein; Carbon-nitrogen ligase with glutamine as amido-N-donor, amidase family protein identified by sequencesimilarity; putative InterPro: Amidase; Family membership; Belongs to the amidase family.
 
    0.793
ABO_0509
(aminotransferase, putative) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00202 InterPro: Aminotransferase class-III pyridoxal-phosphate; Specificity unclear; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.697
pheA
(P-protein including chorismate mutase and prephenate dehydratase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01817 InterPro: Prephenate dehydratase (PDT); High confidence in function and specificity.
 
  
 0.586
tdh
Tartrate dehydrogenase; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00180 InterPro: Isocitrate and isopropylmalate dehydrogenases; High confidence in function and specificity.
 
 
 0.522
gltB
Glutamate synthase, large subunit; Identified by sequencesimilarity; putative identified by match to PFAM protein family HMMPF04897 and HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; High confidence in function and specificity.
     
 0.431
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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