Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mgtEMagnesium transporter; Acts as a magnesium transporter. (454 aa)    
Predicted Functional Partners:
ada
methylated-DNA-[protein]-cysteine S-methyltransferase; (adaptive response regulator protein) identified by match to PFAM protein family HMMPF01035 InterPro: Methylated-DNA--protein-cysteine methyltransferase AraC type helix-turn-helix; High confidence in function and specificity.
      0.713
yojI
Pyoverdine ABC export systempermease/ATP-binding protein identified by sequence similarity; putative InterPro: ABC transporter transmembrane region; Family membership.
      0.695
gltP
(proton/sodium-glutamate/aspartate symporter) identified by match to PFAM protein family HMMPF03600 InterPro: Sodium:dicarboxylate symporter family; Family membership; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
   
 0.541
ABO_1937
Metal ion transporter; Identified by sequencesimilarity; putative InterPro: CBS domain; Function unclear.
  
   
 0.491
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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