Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
narJnarJ. Respiratory nitrate reductase 1 delta chain InterPro: Nitrate reductase delta subunit; High confidence in function and specificity. (258 aa)    
Predicted Functional Partners:
narH
narH. Respiratory nitrate reductase 1 beta chain; High confidence in function and specificity.
 
 
 0.999
narG
(Respiratory nitrate reductase 1 alpha chain) identified by sequencesimilarity; putative; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.999
narI
narI. Respiratory nitrate reductase 1 gamma chain InterPro: Nitrate reductase gamma subunit; High confidence in function and specificity.
 
  
 0.998
ABO_0542
PpiC-type peptidyl-prolyl cis-trans isomerase; Function unclear.
 
    0.980
narK
Nitrite extrusion protein; Identified by sequence similarity; putative; Family membership.
 
  
 0.965
cysG
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
    0.780
ABO_1085
Nitrate transport protein; Identified by sequence similarity InterPro: General substrate transporters; High confidence in function and specificity.
 
  
 0.649
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
  
 0.544
gltB
Glutamate synthase, large subunit; Identified by sequencesimilarity; putative identified by match to PFAM protein family HMMPF04897 and HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; High confidence in function and specificity.
      
 0.490
ptsO
Phosphotransferase system HPr-related protein NPr identified by sequencesimilarity; putative InterPro: Phosphocarrier HPr protein; Family membership.
     
 0.431
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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