Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
ptsOPhosphotransferase system HPr-related protein NPr identified by sequencesimilarity; putative InterPro: Phosphocarrier HPr protein; Family membership. (89 aa)    
Predicted Functional Partners:
ptsP
(phosphoenolpyruvate-protein phosphotransferasePtsP) identified by sequencesimilarity; putative InterPro: PEP-utilizing enzyme; High confidence in function and specificity; Belongs to the PEP-utilizing enzyme family.
  
 
 0.994
ptsN
Phosphotransferase system, nitrogen regulatory IIA protein; Identified by sequencesimilarity; putative InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership.
 
 
 0.993
ABO_2527
N-terminal fragment of a phosphoenolpyruvate-protein phosphotransferase; identified by sequence similarity to Pfam family protein PF00391, PF01590, PF02896 Interpro: belongs to the pep-utilizing enzymes family: IPR00593, IPR006318/IPR000121; Family membership.
  
 
 
 0.822
ABO_0549
Conserved hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.816
ABO_0551
Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein.
  
  
 0.623
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.583
ABO_0553
ABC transporter, ATP-binding protein, putative; Identified by match to TIGR protein family HMMTIGR00968 InterPro: AAA ATPase superfamily; Specificity unclear.
  
  
 0.531
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.512
narK
Nitrite extrusion protein; Identified by sequence similarity; putative; Family membership.
       0.486
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
 
   
 0.463
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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