STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0549Conserved hypothetical protein; Displays ATPase and GTPase activities. (282 aa)    
Predicted Functional Partners:
ptsN
Phosphotransferase system, nitrogen regulatory IIA protein; Identified by sequencesimilarity; putative InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership.
  
  
 0.911
rne
Phosphoric diester hydrolase; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
 
 
 
 0.864
ABO_0551
Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein.
 
  
 0.838
ptsO
Phosphotransferase system HPr-related protein NPr identified by sequencesimilarity; putative InterPro: Phosphocarrier HPr protein; Family membership.
  
  
 0.816
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.653
phoH
PhoH family protein; Identified by match to PFAM protein family HMMPF02562 InterPro: PhoH-like protein; High confidence in function and specificity.
  
    0.567
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.539
ABO_0554
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03968.
  
    0.443
kpsF
KpsF/GutQ family protein identified by match to PFAM protein family HMMPF01380 InterPro: KpsF/GutQ family protein; Family membership.
       0.437
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
 
     0.433
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.