Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABO_0471 | pilS | ABO_0471 | ABO_0472 | Sigma-54 dependent DNA-binding response regulator. | Two-component sensor histidine kinase; Identified by match to PFAM protein family HMMPF04306 InterPro: Histidine kinase C-terminal; High confidence in function and specificity. | 0.990 |
| ABO_0471 | rpoN | ABO_0471 | ABO_0552 | Sigma-54 dependent DNA-binding response regulator. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.956 |
| ABO_0551 | ptsN | ABO_0551 | ABO_0550 | Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein. | Phosphotransferase system, nitrogen regulatory IIA protein; Identified by sequencesimilarity; putative InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership. | 0.920 |
| ABO_0551 | rpoN | ABO_0551 | ABO_0552 | Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.803 |
| hydG | rpoN | ABO_0341 | ABO_0552 | Nitrogen regulation protein NR(I; ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.781 |
| ntrC | rpoN | ABO_2259 | ABO_0552 | Two-component response regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.788 |
| pilS | ABO_0471 | ABO_0472 | ABO_0471 | Two-component sensor histidine kinase; Identified by match to PFAM protein family HMMPF04306 InterPro: Histidine kinase C-terminal; High confidence in function and specificity. | Sigma-54 dependent DNA-binding response regulator. | 0.990 |
| pilS | rpoN | ABO_0472 | ABO_0552 | Two-component sensor histidine kinase; Identified by match to PFAM protein family HMMPF04306 InterPro: Histidine kinase C-terminal; High confidence in function and specificity. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.904 |
| ptsN | ABO_0551 | ABO_0550 | ABO_0551 | Phosphotransferase system, nitrogen regulatory IIA protein; Identified by sequencesimilarity; putative InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership. | Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein. | 0.920 |
| ptsN | rpoN | ABO_0550 | ABO_0552 | Phosphotransferase system, nitrogen regulatory IIA protein; Identified by sequencesimilarity; putative InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.793 |
| rpoA | rpoB | ABO_0422 | ABO_0378 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoA | rpoC | ABO_0422 | ABO_0379 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoA | rpoN | ABO_0422 | ABO_0552 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.919 |
| rpoA | rpoZ | ABO_0422 | ABO_0177 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.997 |
| rpoB | rpoA | ABO_0378 | ABO_0422 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoB | rpoC | ABO_0378 | ABO_0379 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoB | rpoN | ABO_0378 | ABO_0552 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.910 |
| rpoB | rpoZ | ABO_0378 | ABO_0177 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.995 |
| rpoC | rpoA | ABO_0379 | ABO_0422 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoC | rpoB | ABO_0379 | ABO_0378 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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