STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0555Conserved hypothetical protein. (185 aa)    
Predicted Functional Partners:
ABO_0553
ABC transporter, ATP-binding protein, putative; Identified by match to TIGR protein family HMMTIGR00968 InterPro: AAA ATPase superfamily; Specificity unclear.
  
 0.998
ABO_0554
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03968.
  
 
 0.980
ABO_0556
Phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.898
ABO_0496
Membrane protein, putative; (conserved hypothetical protein) identified by sequencesimilarity; putative; Specificity unclear.
  
 
 0.884
ABO_0497
Membrane protein, putative; (conserved hypothetical protein) identified by sequence similarity; putative; Specificity unclear.
  
 
 0.883
kpsF
KpsF/GutQ family protein identified by match to PFAM protein family HMMPF01380 InterPro: KpsF/GutQ family protein; Family membership.
  
  
 0.877
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.606
ABO_0558
Toluene-tolerance protein; (ttg2D) identified by sequence similarity; This family is a transporter which shows similarity to ABC transporters; Family membership.
  
    0.541
ABO_0551
Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein.
     
 0.416
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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