STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0556Phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. (167 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
 0.998
kpsF
KpsF/GutQ family protein identified by match to PFAM protein family HMMPF01380 InterPro: KpsF/GutQ family protein; Family membership.
  
 0.997
kdsA-1
2-dehydro-3-deoxyphosphooctonate aldolase; Identified by match to PFAM protein family HMMPF00793 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-d-manno-octulosonic acid 8- phosphate synthetase) (kdo-8-phosphate synthetase) (kdo 8-p synthase) (kdops); High confidence in function and specificity; Belongs to the KdsA family.
  
 0.997
ABO_0553
ABC transporter, ATP-binding protein, putative; Identified by match to TIGR protein family HMMTIGR00968 InterPro: AAA ATPase superfamily; Specificity unclear.
 
  
 0.924
ABO_0555
Conserved hypothetical protein.
  
  
 0.898
ABO_0554
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03968.
  
  
 0.887
ABO_2629
Ca2+/Na+antiporter protein; Predicted Ca2+/Na+ antiporter; conserved hypothetical protein.
 
  
 0.757
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.620
ABO_0558
Toluene-tolerance protein; (ttg2D) identified by sequence similarity; This family is a transporter which shows similarity to ABC transporters; Family membership.
     
 0.594
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
   
 0.538
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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