STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0586Lipoprotein, putative; Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate; Function unclear. (625 aa)    
Predicted Functional Partners:
ABO_0585
Conserved hypothetical protein; InterPro: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
  
  
 0.855
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
    0.757
ABO_0583
Lipoprotein, putative; Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate; Function unclear.
  
    0.731
ABO_2247
Conserved hypothetical protein.
  
    0.689
ABO_2078
(penicillin-binding protein) identified by sequence similarity; putative InterPro: Penicillin binding protein transpeptidase domain penicillin-binding protein 1a (pbp-1a) (pbp1a) [includes: penicillin- insensitive transglycosylase (EC 2.4.2.-) (peptidoglycan tgase); penicillin-sensitive transpeptidase (EC 3.4.-.-) (dd-transpeptidase)]; High confidence in function and specificity.
  
 
 
 0.684
mrcA
Penicillin-binding protein 1A (PBP-1a) (PBP1a),(Penicillin-insensitive transglycosylase),(Peptidoglycan TGase);(Penicillin-sensitive transpeptidase),(DD-transpeptidase)]. identified by sequence similarity; putative InterPro: Penicillin binding protein transpeptidase domain; High confidence in function and specificity.
  
 
 
 0.683
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
   
 0.680
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
   
 0.675
rsmI
Tetrapyrrole methylase family protein, putative; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.629
hemX
uroporphyrin-III C-methyltransferase, putative; Identified by sequence similarity; putative; Hypothetical protein.
  
     0.612
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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