Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilDLeaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (291 aa)    
Predicted Functional Partners:
tapC
Type IV pilus assembly protein TapC; Identified by sequence similarity; Family membership.
 
  
 0.972
pilB
Type IV fimbrial assembly protein PilB; Identified by sequence similarity and match to PFAM protein family HMMPF00437 InterPro: Bacterial type II secretion system protein E; Family membership.
 
 
 0.966
gspF
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership.
 
  
 0.879
pilT
Type IV pili twitching motility protein PilT; Identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear.
 
   
 0.873
ABO_2303
(type II secretion system protein, putative) identified by sequence similarity and match to PFAM protein family HMMPF00437 Type II traffic warden ATPase; Pectic enzymes secretion protein outE InterPro: Bacterial type II secretion system protein E; Family membership.
 
 
 0.857
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.855
pilU
Type IV pili twitching motility protein PilT; Identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear.
  
   
 0.855
rec2
(DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership.
 
  
 0.840
coae
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.766
ABO_0468
Secretion protein putative identifiedby sequence similarity; putative InterPro: Fimbrial protein pilin; High confidence in function and specificity.
 
   
 0.762
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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