STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dagA(sodium/alanine symporter, amino acid carrier protein alst, Na(+)-linked D-alanine/glycine permease, sodium/proton-dependent alanine carrier protein) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01235 and TIGRFAM protein family HMMTIGR00835; putative InterPro: Sodium:alanine symporter family; High confidence in function and specificity. (445 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
      0.901
nadC
(nicotinate-nucleotide pyrophosphorylase) identified by sequencesimilarity; putative InterPro: Nicotinate-nucleotide pyrophosphorylase; High confidence in function and specificity; Belongs to the NadC/ModD family.
       0.664
ABO_2142
Sodium solute transporter family protein; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.586
ABO_0306
Na+-dependent transporters of the SNF family similar pst:PSPTO4514; Family membership; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
   
 0.573
ABO_0619
Conserved hypothetical protein; Identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa.
       0.507
ABO_0358
Identified by match to PFAM protein family HMMPF00654 InterPro: Voltage gated chloride channels; Specificity unclear.
  
    0.463
ampE
Inner membrane protein AmpE; Family membership.
       0.415
ampD
N-acetyl-anhydromuramyl-L-alanine amidase AmpD; Identified by sequencesimilarity; putative; High confidence in function and specificity.
       0.412
gltS
Sodium/glutamate symport carrier protein; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
 
   
 0.402
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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