STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0619Conserved hypothetical protein; Identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa. (745 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.829
ABO_1227
Conserved hypothetical protein.
  
     0.706
ABO_1464
Conserved hypothetical protein; Identified by sequence similarity.
  
    0.694
ABO_1260
Conserved hypothetical protein.
  
     0.672
ABO_2444
Conserved hypothetical protein.
  
     0.672
ampD
N-acetyl-anhydromuramyl-L-alanine amidase AmpD; Identified by sequencesimilarity; putative; High confidence in function and specificity.
       0.670
ampE
Inner membrane protein AmpE; Family membership.
       0.670
chpA
ChpA two-component hybrid sensor and regulator, putative identified by match to TIGR protein family HMMTIGR01387 InterPro: Histidine kinase C-terminal still frameshift probable component of chemotactic signal transduction system; Specificity unclear.
 
    0.643
ABO_0979
Conserved hypothetical protein.
  
     0.605
pilI
Type IV pili signal transduction protein PilI; Identified by match to PFAM protein family HMMPF01584 InterPro: CheW-like domain; High confidence in function and specificity.
 
     0.604
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.