Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ampEInner membrane protein AmpE; Family membership. (282 aa)    
Predicted Functional Partners:
ampD
N-acetyl-anhydromuramyl-L-alanine amidase AmpD; Identified by sequencesimilarity; putative; High confidence in function and specificity.
  
  
 0.868
ABO_0619
Conserved hypothetical protein; Identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa.
       0.670
nadC
(nicotinate-nucleotide pyrophosphorylase) identified by sequencesimilarity; putative InterPro: Nicotinate-nucleotide pyrophosphorylase; High confidence in function and specificity; Belongs to the NadC/ModD family.
     
 0.646
aceE
Pyruvate dehydrogenase, E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.496
dagA
(sodium/alanine symporter, amino acid carrier protein alst, Na(+)-linked D-alanine/glycine permease, sodium/proton-dependent alanine carrier protein) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01235 and TIGRFAM protein family HMMTIGR00835; putative InterPro: Sodium:alanine symporter family; High confidence in function and specificity.
       0.415
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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