STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0628InterPro: TonB-dependent receptor protein; Family membership. (653 aa)    
Predicted Functional Partners:
tonB2
Ferric siderophore transport system,periplasmicbinding prot; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.906
ABO_0627
Conserved hypothetical protein; Identified by match to TIGR protein family HMMTIGR00636 InterPro: Protein of unknown function DUF80; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.775
foxA
(ferrioxamine receptor putative) identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
  
  
 0.732
fhuA
Ferrichrome-iron receptor precursor (Ferric hydroxamate uptake) (Ferric hydroxamate receptor)., TonB-dependent siderophore receptor, TonB-dependent Receptor Plug Domain, TonB-siderophor: TonB-dependent siderophore receptor; High confidence in function and specificity.
 
  
 0.695
ABO_2369
Fe3+-siderophore ABC transporter permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.576
exbB2
Identified by match to PFAM protein family HMMPF01618 InterPro: MotA/TolQ/ExbB proton channel family; High confidence in function and specificity.
 
  
 0.565
exbB1
MotA/TolQ/ExbB proton channel family protein identified by match to PFAM protein family HMMPF01618; High confidence in function and specificity.
 
  
 0.563
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
  
 0.534
ABO_0629
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.515
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
  
 
 0.465
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.