Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_0686Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Rhomboid family. (273 aa)    
Predicted Functional Partners:
ABO_0685
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
       0.838
ABO_0684
Translation elongation factor P identified by match to TIGR protein family HMMTIGR00038; Family membership.
     
 0.814
ABO_0687
Conserved hypothetical protein.
       0.565
ABO_1921
Rhodanese domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
  
  
 0.564
dctP
(TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; putative; Family membership.
       0.561
dctQ
(TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; putative TMHMM reporting 4 transmembrane helices; High confidence in function and specificity.
       0.561
dctM
(TRAP dicarboxylate transporter DctM subunit putative) identified by sequence similarity; putative InterPro: DedA family TMHMM reporting 11 transmembrane helices; Family membership.
       0.561
tatA
Sec-independent protein translocase protein tatA/E homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.534
plsC2
1-acyl-sn-glycerol-3-phosphate acyltransferase; (plsC) identified by match to TIGR protein family HMMTIGR00530 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership.
       0.510
clpP
ATP-dependent Clp protease, proteolytic subunitClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
 
 0.448
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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