STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0687Conserved hypothetical protein. (283 aa)    
Predicted Functional Partners:
dctP
(TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; putative; Family membership.
 
 
 
 0.969
dctQ
(TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; putative TMHMM reporting 4 transmembrane helices; High confidence in function and specificity.
 
     0.954
dctM
(TRAP dicarboxylate transporter DctM subunit putative) identified by sequence similarity; putative InterPro: DedA family TMHMM reporting 11 transmembrane helices; Family membership.
 
     0.946
ABO_0684
Translation elongation factor P identified by match to TIGR protein family HMMTIGR00038; Family membership.
       0.565
ABO_0685
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
       0.565
ABO_0686
Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Rhomboid family.
       0.565
ABO_2017
cAMP-dependent protein kinase regulatory chain; (cytochrome c551 peroxidase putative) identified by match to PFAM protein family HMMPF03150 InterPro: Cyclic nucleotide-binding domain; Family membership.
  
     0.552
dctP-2
TRAP dicarboxylate transporter DctP subunit. identified by sequencesimilarity. Pfam: SBP_bac7: Bacterial extracellular solute-binding protein, family 7; Family membership.
 
 
 
 0.497
blc
Outer membrane lipoprotein Blc, putative; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
      
 0.483
ABO_0637
Putative membrane protein; Hypothetical protein, TMHMM: reporting 6 transmembrane helices.
  
     0.419
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.