STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_0699Conserved hypothetical protein. (313 aa)    
Predicted Functional Partners:
csuC
Type 1 pili usher pathway chaperone CsuC; Identified by match to PFAM protein family HMMPF00345; Specificity unclear.
 
 
 0.969
csuD
Type 1 pili usher protein CsuD; Identified by sequence similarity; putative InterPro: Fimbrial biogenesis outer membrane usher protein; Function unclear.
 
  
 0.949
ABO_0702
Conserved hypothetical protein.
 
    
0.810
fimC
Type 1 pili chaperone protein FimC; Identified by match to PFAM protein family HMMPF02753 and sequence similarity; Specificity unclear.
 
 
 0.481
fimD
Type 1 pili subunit FimD; Identified by match to PFAM protein family HMMPF00577 InterPro: Fimbrial biogenesis outer membrane usher protein; Specificity unclear.
 
  
 0.456
ABO_1734
Conserved hypothetical protein.
  
     0.423
ABO_0698
Conserved hypothetical protein.
       0.410
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.