Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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hyuB(N-methylhydantoinase B, hydantoin utilization protein B, putative) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF02538 InterPro: Hydantoinase B/oxoprolinase; Function unclear. (497 aa)    
Predicted Functional Partners:
hyuA
(N-methylhydantoinase A, hydantoin utilization protein A) identified by sequence similarity; putative identified by mtach to PFAM protein family HMMPF01968 InterPro: Hydantoinase/oxoprolinase; High confidence in function and specificity.
 0.999
argD
Acetylornithine aminotransferase; Identified by sequence similarity; putative InterPro: Aminotransferase class-III pyridoxal-phosphate; High confidence in function and specificity; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.547
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.544
fecA
FecA-like outer membrane receptor identified by sequence similarity; putative; High confidence in function and specificity.
       0.542
ydhD
Glutaredoxin-related protein; conserved hypothetical protein; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.454
ABO_0717
ABC transporter, ATP-binding protein; Identified by sequence similarity and by match to PFAM protein family HMMPF0005; putative InterPro: AAA ATPase superfamily; Specificity unclear; Belongs to the ABC transporter superfamily.
       0.441
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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