STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rimKRibosomal protein S6 modification protein; Identified by sequence similarity; putative InterPro: S6 modification enzyme RimK family protein; High confidence in function and specificity. (302 aa)    
Predicted Functional Partners:
ABO_0727
Conserved hypothetical protein.
     0.995
ABO_0729
Deacylase, putative; (conserved hypothetical protein) identified by sequence similarity; putative.
     0.887
gloA-2
(lactoylglutathione lyase, methylglyoxalase, aldoketomutase, glyoxalase I, ketone-aldehyde mutase, S-D-lactoylglutathione methylglyoxal lyase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00903 InterPro: Glyoxalase I; High confidence in function and specificity.
     
 0.778
ABO_2412
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 
     0.752
ABO_1779
Conserved hypothetical protein.
 
  
 0.737
ABO_1738
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 
     0.640
ABO_2268
Conserved hypothetical protein; Identified by sequence similarity; putative.
 
     0.491
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.