Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_0742Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03561. (586 aa)    
Predicted Functional Partners:
ABO_0741
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 0.998
ABO_1823
Conserved hypothetical protein.
  
 
 0.622
ABO_0744
Conserved hypothetical protein.
  
    0.594
ABO_0743
DNA-binding response regulator; Identified by sequence similarity; putative InterPro: Response regulator receiver domain; Specificity unclear.
       0.580
rsmJ
Conserved hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.
  
     0.428
ABO_2284
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.426
ABO_2371
TonB-dependent receptor protein; Identified by match to PFAM protein family HMMPF00593 InterPro: TonB-dependent receptor protein; Family membership.
  
     0.426
pal
Peptidogycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
     0.419
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
     0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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